PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108143.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 332aa    MW: 38149.7 Da    PI: 9.96
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108143.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018112135123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     + C+ Cg+ F +++ L++H +  H
  XP_010108143.1 112 FHCGVCGRNFYNHEKLVNHFKQiH 135
                     78*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.759112140IPR007087Zinc finger, C2H2
PROSITE patternPS000280114135IPR007087Zinc finger, C2H2
CDDcd061677.62E-7186260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAAFHKIQTI RLNHLNLFTL LNRFYHVKPN LGSDSPTPNS SPTPKKQPKN VAIFWDLDNK  60
PPSPFRPFEA ALKLKKTASS FGFVRDMIAY AKPTRDQRRR RTQLENTCGE SFHCGVCGRN  120
FYNHEKLVNH FKQIHERENS KRLNQIDSAR GSRRVKLVAK YSMKMDKYKK AVREVLTPKV  180
GFGLGDELER AGFWVGNVGD RKSHMVAVME KRRAECLVLV SDDYGFVEVL QEAKKRCVKT  240
VVVGERVDAG GGALKRFADS GFCWREIMMW KAKKEAVSVV GKWKDQDVLE RLEWRYDPEV  300
EKKSLCGLDD DDGDGCEQVD KSSSWWELAS ER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108143.10.0hypothetical protein L484_023232
TrEMBLW9S6V40.0W9S6V4_9R
STRINGPOPTR_0003s11420.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-103C2H2 family protein